Jurkat, H.; Christina, U.; V., Anke; Janosch,, R.; Sauer, S.; Ott, U.; Büssing, Arndt; Kohls, Niko (2014)
Jurkat, H.; Christina, U.; V., Anke; Janosch,, R.; Sauer, S.; Ott, U.; Büssing, Arndt...
Paper presented at the Deutscher Kongress für Psychosomatische Medizin und Psychotherapie Berlin, 26 – 29.3.2014..
Esch, Tobias; Offenbächer, M.; Kohls, Niko (2014)
In P. Angerer, J. Glaser, H. Gündel, P. Henningsen, C. Lahmann, S. Letzel & D. Nowak (Eds.), Psychische und psychosomatische Gesundheit in der Arbeit (pp. 261 - 268). Landsberg: Ecomed., 261-268.
Geelhaar, Jens; Markert, Michael; Deich, Johannes; Schied, Martin (2014)
Proceedings of the 8th International Conference on Tangible, Embedded and Embodied Interaction 2014, 365-368.
DOI: 10.1145/2540930.2567900
Ebersberger, Ingo; Simm, Stefan; Leisegang, Matthias; Schmitzberger, Peter; Mirus, Oliver; von Haeseler, Arndt; Bohnsack, Markus; Schleiff, Enrico (2014)
Ebersberger, Ingo; Simm, Stefan; Leisegang, Matthias; Schmitzberger, Peter...
Nucleic Acids Research 42 (3), 1509–1523.
DOI: 10.1093/nar/gkt1137
Ribosome biogenesis is fundamental for cellular life, but surprisingly little is known about the underlying pathway. In eukaryotes a comprehensive collection of experimentally verified ribosome biogenesis factors (RBFs) exists only for Saccharomyces cerevisiae. Far less is known for other fungi, animals or plants, and insights are even more limited for archaea. Starting from 255 yeast RBFs, we integrated ortholog searches, domain architecture comparisons and, in part, manual curation to investigate the inventories of RBF candidates in 261 eukaryotes, 26 archaea and 57 bacteria. The resulting phylogenetic profiles reveal the evolutionary ancestry of the yeast pathway. The oldest core comprising 20 RBF lineages dates back to the last universal common ancestor, while the youngest 20 factors are confined to the Saccharomycotina. On this basis, we outline similarities and differences of ribosome biogenesis across contemporary species. Archaea, so far a rather uncharted domain, possess 38 well-supported RBF candidates of which some are known to form functional sub-complexes in yeast. This provides initial evidence that ribosome biogenesis in eukaryotes and archaea follows similar principles. Within eukaryotes, RBF repertoires vary considerably. A comparison of yeast and human reveals that lineage-specific adaptation via RBF exclusion and addition characterizes the evolution of this ancient pathway.
Widera , Marek ; Klein, Antonia Nicole ; Cinar, Yeliz ; Funke, Susanne A.; Willbold, Dieter; Schaal , Heiner (2014)
Widera , Marek ; Klein, Antonia Nicole ; Cinar, Yeliz ; Funke, Susanne A....
AIDS Research and Therapy 11, 1.
DOI: 10.1186/1742-6405-11-1
Olubiyi , O. O. ; Frenzel , Oliver ; Bartnik , Dirk ; Glück , J. M. ; Brener, Oleksandr; Nagel-Steger, Luitgard; Funke, Susanne A.; Willbold, Dieter; Strodel , B. (2014)
Olubiyi , O. O. ; Frenzel , Oliver ; Bartnik , Dirk ; Glück , J. M. ; Brener, Oleksandr...
National Library of Medicine
National Center for Biotechnology Information, 1448-57.
DOI: 10.2174/0929867321666131129122247
Wilde, Mathias (2014)
Raumforschung und Raumordnung 72 (5), 371-384.
DOI: 10.1007/s13147-014-0301-z
Wilde, Mathias (2014)
RaumPlanung (3), 61-64.
Wilde, Mathias (2014)
25.
DOI: 10.1007/978-3-658-03819-9
Exner, Dagmar; Lucchi, Elena; Troi, Alexandra; Freundorfer, Franz; Andrè, Mathilde; Kofler Engl, Waltraud (2014)
Exner, Dagmar; Lucchi, Elena; Troi, Alexandra; Freundorfer, Franz; Andrè, Mathilde...
Proceedings of the 18th international Passive House Conference, Aachen.
Paul, Puneet; Simm, Stefan; Mirus, Oliver; Scharf, Klaus-Dieter; Fragkostefanakis, Sotirios; Schleiff, Enrico (2014)
Paul, Puneet; Simm, Stefan; Mirus, Oliver; Scharf, Klaus-Dieter...
PloS One 9 (5), e97745.
DOI: 10.1371/journal.pone.0097745
Vesicle transport is a central process to ensure protein and lipid distribution in eukaryotic cells. The current knowledge on the molecular components and mechanisms of this process is majorly based on studies in Saccharomyces cerevisiae and Arabidopsis thaliana, which revealed 240 different proteinaceous factors either experimentally proven or predicted to be involved in vesicle transport. In here, we performed an orthologue search using two different algorithms to identify the components of the secretory pathway in yeast and 14 plant genomes by using the ’core-set’ of 240 factors as bait. We identified 4021 orthologues and (co-)orthologues in the discussed plant species accounting for components of COP-II, COP-I, Clathrin Coated Vesicles, Retromers and ESCRTs, Rab GTPases, Tethering factors and SNAREs. In plants, we observed a significantly higher number of (co-)orthologues than yeast, while only 8 tethering factors from yeast seem to be absent in the analyzed plant genomes. To link the identified (co-)orthologues to vesicle transport, the domain architecture of the proteins from yeast, genetic model plant A. thaliana and agriculturally relevant crop Solanum lycopersicum has been inspected. For the orthologous groups containing (co-)orthologues from yeast, A. thaliana and S. lycopersicum, we observed the same domain architecture for 79% (416/527) of the (co-)orthologues, which documents a very high conservation of this process. Further, publically available tissue-specific expression profiles for a subset of (co-)orthologues found in A. thaliana and S. lycopersicum suggest that some (co-)orthologues are involved in tissue-specific functions. Inspection of localization of the (co-)orthologues based on available proteome data or localization predictions lead to the assignment of plastid- as well as mitochondrial localized (co-)orthologues of vesicle transport factors and the relevance of this is discussed.
Giordano, J.; Benedikter, R.; Kohls, Niko (2013)
In A. Muzur & H. M. Sass (Eds.), Fritz Jahr and the Foundations of Global Bioethics - The Future of Integrative Bioethics (Vol. 37, pp. 267 - 280). Münster: Lit. Vol. 37, 267-280.
Offenbaecher, M.; Kohls, Niko; Toussaint, L.; Sigl, C.; Winkelmann, A.; Hieblinger, R.; Walther, A.; Büssing, Arndt (2013)
Offenbaecher, M.; Kohls, Niko; Toussaint, L.; Sigl, C.; Winkelmann, A.; Hieblinger, R....
Evidence-based Complementary and Alternative Medicine, 2013, 13. .
Kohls, Niko (2013)
In J. Galuska (Ed.), Bewusstsein: Grundlagen Anwendungen und Entwicklung (pp. 83 - 93). Berlin: MWV., 83-93.
Haas, Franziska; Exner, Dagmar; Troi, Alexandra; Franzen, Christoph; Frey, Wolfgang (2013)
Proceedings of the 2013 Digital Heritage International Congress (DigitalHeritage), 781–781.
DOI: 10.1109/DigitalHeritage.2013.6743847
Herold-Majumdar, A.; Rieß, J.; Daubner, A.; Randzio, O; Kohls, Niko; Müller, M.; Offenbächer, M.; Sauer, S. (2013)
Herold-Majumdar, A.; Rieß, J.; Daubner, A.; Randzio, O; Kohls, Niko; Müller, M....
Gesundheit zwischen Wirtschaft und Demographie. Gemeinsamer Kongress der Deutschen Gesellschaft für Sozialmedizin und Prävention und der Deutschen Gesellschaft für Medizinische Soziologie, 19.9.2013, 358-359.
Kohls, Niko; Berzlanovich, A.; Sauer, S. (2013)
In W. Kersten & J. Wittmann (Eds.), Kompetenz, Interdisziplinarität und Komplexität in der Betriebswirtschaftslehre (pp. 163-177). Wiesbaden: Springer , 163-177.
Cmyrev , A. ; Reißing, Ralf (2013)
Informatik 2013, 11. Workshop Automotive Software Engineering, September 2013, Koblenz. .
van Groen, Thomas; Kadish, Inga; Funke, Susanne A.; Bartnik , Dirk ; Willbold, Dieter (2013)
van Groen, Thomas; Kadish, Inga; Funke, Susanne A.; Bartnik , Dirk ...
J Alzheimers Dis. 2013; 34(3): 609–620. , 34 | 609-620.
DOI: 10.3233/JAD-121792
Hadley, T.; Kohls, Niko; Plischke , Herbert ; Giordano, J. (2013)
Int Neuroethics Soc Abstr..