Goodin, S.; Treaster, M. K.; Rabon, J.; Sirois, F. M.; Offenbächer, M.; Kohls, Niko; Toussaint, L.; Hirsch, J. K. (2017)
Goodin, S.; Treaster, M. K.; Rabon, J.; Sirois, F. M.; Offenbächer, M.; Kohls, Niko...
Presentation at the 32nd annual Appalachian Student Research Forum, East Tennessee State University, Johnson City, TN, USA 2017.
Montgomery, M.; Brooks, B.; Kohls, Niko; Offenbächer, M.; Toussaint, L.; Sirois, F. M.; Hirsch, J. K. (2017)
Montgomery, M.; Brooks, B.; Kohls, Niko; Offenbächer, M.; Toussaint, L.; Sirois, F. M....
Presentation at the 32nd annual Appalachian Student Research Forum, East Tennessee State University, Johnson City, TN, USA 2017.
Otten, S.; Schötz, E.; Wittmann, M.; Kohls, Niko; Schmidt, S.; Meißner, Karin (2017)
In N. Farb, C. Kerr, W.E. Mehling & O. Pollatos, O. (Eds.), Interoception, Contemplative Practice, and Health. Lausanne: Frontiers Media.
DOI: https://doi.org.10.3389/978-2-88945-094-7
Hirsch, J. K.; Kohls, Niko; Offenbächer, M.; Pugh, K.; Sirois, F. M.; Toussaint, L.; Treaster, M. K. (2017)
Hirsch, J. K.; Kohls, Niko; Offenbächer, M.; Pugh, K.; Sirois, F. M.; Toussaint, L....
Presentation at the 64th annual conference of Tennessee Psychological Association, Nashville, TN. Awarded 2nd Place in Graduate Oral Presentation Competition..
Treaster, M. K.; Pugh, K.; Sirois, F. M.; Kohls, Niko; Nöfer, Eberhard; Hirsch, J. K. (2017)
Treaster, M. K.; Pugh, K.; Sirois, F. M.; Kohls, Niko; Nöfer, Eberhard...
Presentation at the 64th annual conference of Tennessee Psychological Association, Nashville, TN. Awarded 1st Place in Graduate Oral Presentation Competition..
Offenbaecher, M.; Dezutter, J.; Kohls, Niko; Sigl, C.; Vallejo, M. A.; Rivera, J.; Bauerdorf, F.; Schelling, J.; Vincent, A.; Hirsch, J. K.; Sirois, F. M.; Webb, J. R.; Toussaint, L. (2017)
Offenbaecher, M.; Dezutter, J.; Kohls, Niko; Sigl, C.; Vallejo, M. A.; Rivera, J....
The Clinical journal of pain 2017 / 33 (6), 528–534.
DOI: 10.1097/AJP.0000000000000432
OBJECTIVES
Keller, Mario; Hu, Yangjie; Mesihovic, Anida; Fragkostefanakis, Sotirios; Schleiff, Enrico; Simm, Stefan (2017)
Keller, Mario; Hu, Yangjie; Mesihovic, Anida; Fragkostefanakis, Sotirios...
DNA research: an international journal for rapid publication of reports on genes and genomes 24 (2), 205–217.
DOI: 10.1093/dnares/dsw051
Alternative splicing (AS) is a key control mechanism influencing signal response cascades in different developmental stages and under stress conditions. In this study, we examined heat stress (HS)-induced AS in the heat sensitive pollen tissue of two tomato cultivars. To obtain the entire spectrum of HS-related AS, samples taken directly after HS and after recovery were combined and analysed by RNA-seq. For nearly 9,200 genes per cultivar, we observed at least one AS event under HS. In comparison to control, for one cultivar we observed 76% more genes with intron retention (IR) or exon skipping (ES) under HS. Furthermore, 2,343 genes had at least one transcript with IR or ES accumulated under HS in both cultivars. These genes are involved in biological processes like protein folding, gene expression and heat response. Transcriptome assembly of these genes revealed that most of the alternative spliced transcripts possess truncated coding sequences resulting in partial or total loss of functional domains. Moreover, 141 HS specific and 22 HS repressed transcripts were identified. Further on, we propose AS as layer of stress response regulating constitutively expressed genes under HS by isoform abundance.
Dammers, C.; Yolcu , D.; Kukuk, Laura; Willbold, Dieter; Pickhardt, Marcus ; Mandelkow, E.; Horn, A. H. C.; Sticht, H.; Malhis, M.; Will, Nadja ; Schuster, Judith ; Funke, Susanne A. (2016)
Dammers, C.; Yolcu , D.; Kukuk, Laura; Willbold, Dieter; Pickhardt, Marcus ...
AD/PD 2019.
DOI: 10.1371/journal.pone.0167432
Offenbächer, M.; Kohls, Niko; Walker, L.; Hermann, C.; Hügle, B.; Jäger,, N.; Richter,, M.; Haas, J.-P (2016)
Offenbächer, M.; Kohls, Niko; Walker, L.; Hermann, C.; Hügle, B.; Jäger,, N....
Rheumatology International, 1-10. doi:10.1007/s00296-016-3504-5.
DOI: 10.1007/s00296-016-3504-5
van Dyck, M.; Weber, Annemarie; Schelling, J.; Kohls, Niko; Poggenburg, S.; Offenbächer, M. (2016)
van Dyck, M.; Weber, Annemarie; Schelling, J.; Kohls, Niko; Poggenburg, S....
50. Kongress für Allgemein- und Familienmedizin, Frankfurt; 29.9.2016.
Weber, Annemarie; Schelling, J.; Kohls, Niko; van Dyck, M.; Nöfer, Eberhard; Offenbächer, M. (2016)
Weber, Annemarie; Schelling, J.; Kohls, Niko; van Dyck, M.; Nöfer, Eberhard...
50. Kongress für Allgemein- und Familienmedizin, Frankfurt; 29.9.2016.
Simm, Stefan; Einloft, Jens; Mirus, Oliver; Schleiff, Enrico (2016)
Biological Research 49 (1), 31.
DOI: 10.1186/s40659-016-0092-5
BACKGROUND: Physicochemical properties are frequently analyzed to characterize protein-sequences of known and unknown function. Especially the hydrophobicity of amino acids is often used for structural prediction or for the detection of membrane associated or embedded β-sheets and α-helices. For this purpose many scales classifying amino acids according to their physicochemical properties have been defined over the past decades. In parallel, several hydrophobicity parameters have been defined for calculation of peptide properties. We analyzed the performance of separating sequence pools using 98 hydrophobicity scales and five different hydrophobicity parameters, namely the overall hydrophobicity, the hydrophobic moment for detection of the α-helical and β-sheet membrane segments, the alternating hydrophobicity and the exact ß-strand score. RESULTS: Most of the scales are capable of discriminating between transmembrane α-helices and transmembrane β-sheets, but assignment of peptides to pools of soluble peptides of different secondary structures is not achieved at the same quality. The separation capacity as measure of the discrimination between different structural elements is best by using the five different hydrophobicity parameters, but addition of the alternating hydrophobicity does not provide a large benefit. An in silico evolutionary approach shows that scales have limitation in separation capacity with a maximal threshold of 0.6 in general. We observed that scales derived from the evolutionary approach performed best in separating the different peptide pools when values for arginine and tyrosine were largely distinct from the value of glutamate. Finally, the separation of secondary structure pools via hydrophobicity can be supported by specific detectable patterns of four amino acids. CONCLUSION: It could be assumed that the quality of separation capacity of a certain scale depends on the spacing of the hydrophobicity value of certain amino acids. Irrespective of the wealth of hydrophobicity scales a scale separating all different kinds of secondary structures or between soluble and transmembrane peptides does not exist reflecting that properties other than hydrophobicity affect secondary structure formation as well. Nevertheless, application of hydrophobicity scales allows distinguishing between peptides with transmembrane α-helices and β-sheets. Furthermore, the overall separation capacity score of 0.6 using different hydrophobicity parameters could be assisted by pattern search on the protein sequence level for specific peptides with a length of four amino acids.
Toussaint, L.; Offenbächer, M.; Dezutter, J.; Kohls, Niko; Sigl, C.; Vallejo, M.; Weber, Annemarie; Schelling, J.; Vincent, A.; Hirsch, J. K.; Poggenburg, S.; Sirois, F. (2016)
Toussaint, L.; Offenbächer, M.; Dezutter, J.; Kohls, Niko; Sigl, C.; Vallejo, M....
Conference: 8th European Conference on Positive Psychology, Angers, Frankreich,28.6.-1.7.2016; DOI: 10.13140/RG.2.1.4511.5768.
DOI: https://doi.org.10.13140/RG.2.1.4511.5768
Weber, Annemarie; Kretschmer, M.; Uhlemayr, M.; Kaltwasser, V.; Kohls, Niko (2016)
Empirische Pädagogik, 30(2), 5-20..
Tietze, Sabrina; Lindner, Gerhard (2016)
Proceedings Actuator16, 451 - 454.
The kinetics of the charge transport across the solid-liquid interface between the electrode and the electrolyte is controlled by a diffusion boundary layer, which is responsible for the time needed for charging the battery. Therefore a removal of this boundary layer by acoustic streaming induced by surface acoustic waves propagating on the electrodes was considered to be promising approach for a reduction of the charging time. Previous electropolishing experiments have shown that Scholte waves were particularly effective in that respect. This concept has been transferred to a model electrode system representing the core of a lead acid battery, where significant reductions of the charging time and corresponding increases of the charging currents resulting from surface acoustic wave sonication have been observed.
Offenbächer, M.; Toussaint, L.; Dezutter, J.; Kohls, Niko; Sigl, C.; Vallejo, M.; Rivera, J.; Weber, Annemarie; Schelling, J.; Vincent, A.; Hirsch, J. K.; Poggenburg, S.; Sirois, F. (2016)
Offenbächer, M.; Toussaint, L.; Dezutter, J.; Kohls, Niko; Sigl, C.; Vallejo, M....
8th European Conference on Positive Psychology, Angers, Frankreich,28.6.-1.7.2016, DOI: 10.13140/RG.2.1.1365.8482.
DOI: https://doi.org.10.13140/RG.2.1.1365.8482
Offenbächer, M.; Dezutter, J.; Kohls, Niko; Sigl, C.; Vallejo, M.; Rivera, J.; Weber, Annemarie; Schelling, J.; Vincent, A.; Hirsch, J. K.; Sirois, F.; Poggenburg, S.; Toussaint, L. (2016)
Offenbächer, M.; Dezutter, J.; Kohls, Niko; Sigl, C.; Vallejo, M.; Rivera, J....
8th European Conference on Positive Psychology, Angers, Frankreich,28.6.-1.7.2016, DOI: 10.13140/RG.2.1.2414.4246.
DOI: https://doi.org.10.13140/RG.2.1.2414.4246
Toussaint, L.; Offenbächer, M.; Dezutter, J.; Kohls, Niko; Sigl, C.; Vallejo, M.; Weber, Annemarie; Schelling, J.; Vincent, A.; Hirsch, J. K.; Poggenburg, S.; Sirois, F. (2016)
Toussaint, L.; Offenbächer, M.; Dezutter, J.; Kohls, Niko; Sigl, C.; Vallejo, M....
Deutschen Kongress für Forschung in der Positiven Psychologie in Trier, 19.-21. Mai 2016.
Offenbächer, M.; Toussaint, L.; Dezutter, J.; Kohls, Niko; Sigl, C.; Vallejo, M.; Rivera, J.; Weber, Annemarie; Schelling, J.; Vincent, A.; Hirsch, J. K.; Poggenburg, S.; Sirois, F. (2016)
Offenbächer, M.; Toussaint, L.; Dezutter, J.; Kohls, Niko; Sigl, C.; Vallejo, M....
Conference: 1. Deutschen Kongress für Forschung in der Positiven Psychologie in Trier, 19.-21. Mai 2016.
Offenbächer, M.; Dezutter, J.; Kohls, Niko; Sigl, C.; Vallejo, M.; Rivera, J.; Weber, Annemarie; Schelling, J.; Vincent, A.; Hirsch, J. K.; Sirois, F.; Poggenburg, S.; Toussaint, L. (2016)
Offenbächer, M.; Dezutter, J.; Kohls, Niko; Sigl, C.; Vallejo, M.; Rivera, J....
1. Deutschen Kongress für Forschung in der Positiven Psychologie in Trier, 19.-21. Mai 2016.
Hochschule Coburg
Friedrich-Streib-Str. 2
96450 Coburg